In the Cluster Analysis of DGGE band patterns, I have two different experiments of the same samples to be processed. My aim is to obtain a dendrogram where each branch is the average of two entries relative to the same sample. Is the software able to consider two different entries, that are two different lanes of the same gel or belonging to different gels, as two replicates of the same sample? In that case, how has the software to be setted?
